ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5n39A1 - ECOD Domain | ECOD

ECOD/Domains/e5n39A1

e5n39A1

UID: 002165083

PDB

Range: A:-2-350
PDB: 5N39 chain A(all domains)
UniProt: P25321 (all domains)
Gene: PRKACA

Molecule: cAMP-dependent protein kinase catalytic subunit alpha

3D Structure

Loading viewer...

Related Domains

Browse other domains in Pkinase →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupProtein kinase/SAICAR synthase/ATP-grasp(206)

HH-groupProtein kinase/SAICAR synthase/ATP-grasp(206.1)

TT-groupProtein kinase(206.1.1)

FFamilyPkinase(206.1.1.1)

Ligands

in contact, ≤ 4 Å

(2~{S})-2-(2,3-dihydro-1,4-benzodioxin-6-yl)pyrrolidin-1-ium8LZ

+ 2 additives (Dimethyl sulfoxide, (4r)-2-Methylpentane-2,4-Diol)

Dimethyl sulfoxideDMS
DrugBank DB01093
(4r)-2-Methylpentane-2,4-Diol

Pfam Families

PF00069Pkinase

Protein kinase domain

ClanCL0016PKinase

External Links

ECOD PDB View: 5N39 RCSB PDB: 5N39 PDBe: 5N39 UniProt: P25321

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB03564

Shown in the structure viewer. Drug annotations from DrugDomain.