ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6ek6A3 - ECOD Domain | ECOD

ECOD/Domains/e6ek6A3

e6ek6A3

UID: 002166156

PDB

Range: A:677-754
PDB: 6EK6 chain A(all domains)
UniProt: Q9UGL1 (all domains)
Gene: KDM5B

Molecule: Lysine-specific demethylase 5B,Lysine-specific demethylase 5B

3D Structure

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Related Domains

Browse other domains in zf-C5HC2 →

Classification

AArchitecturefew secondary structure elements(a.19)

XX-groupGlucocorticoid receptor-like(377)

HH-groupLIM domain-like(377.1)

TT-groupLIM domain-like(377.1.1)

FFamilyzf-C5HC2(377.1.1.12)

Ligands

in contact, ≤ 4 Å

Zinc ionZN
metal

+ 2 additives (Dimethyl sulfoxide, 1,2-ETHANEDIOL)

Dimethyl sulfoxideDMS
1,2-ETHANEDIOLEDO

Shown in the structure viewer.

Pfam Families

PF02928zf-C5HC2

C5HC2 zinc finger

External Links

ECOD PDB View: 6EK6 RCSB PDB: 6EK6 PDBe: 6EK6 UniProt: Q9UGL1

Downloads

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Drug annotations from DrugDomain.