ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5y5sH1 - ECOD Domain | ECOD

ECOD/Domains/e5y5sH1

e5y5sH1

UID: 002171657

PDB

Range: H:5-34
PDB: 5Y5S chain H(all domains)
UniProt: D2Z0P9 (all domains)
Gene: puhA

Molecule: Photosynthetic reaction center H subunit

3D Structure

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Related Domains

Browse other domains in PRCH →

Classification

AArchitectureextended segments(a.20)

XX-groupPhotosystem II reaction centre subunit H, transmembrane region(5002)

HH-groupPhotosystem II reaction centre subunit H, transmembrane region(5002.1)

TT-groupPhotosystem II reaction centre subunit H, transmembrane region(5002.1.1)

FFamilyPRCH(5002.1.1.1)

Ligands

in contact, ≤ 4 Å

Tetrastearoyl cardiolipinCDL
drugDrugBank DB03429
1,2-dihexadecanoyl-sn-glycero-3-phosphoethanolaminePEF
drugDrugBank DB01728

Pfam Families

Photosynthetic reaction centre, H-chain N-terminal region

ClanCL0350PRC-barrel

External Links

ECOD PDB View: 5Y5S RCSB PDB: 5Y5S PDBe: 5Y5S UniProt: D2Z0P9

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATEPGV

+ 2 additives (Dodecyldimethylamine N-oxide, Dodecyl-beta-d-maltoside)

Dodecyldimethylamine N-oxideLDA
DrugBank DB04147within 5 Å only
Dodecyl-beta-d-maltosideLMT
within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.