ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3vq6A1 - ECOD Domain | ECOD

ECOD/Domains/e3vq6A1

e3vq6A1

UID: 000222328

PDB

Range: A:56-207
PDB: 3VQ6 chain A(all domains)
UniProt: Q72498 (all domains)
Gene: pol

Molecule: POL polyprotein

3D Structure

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Related Domains

Browse other domains in rve →

Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupRibonuclease H-like(2484)

HH-groupRibonuclease H-like(2484.1)

TT-groupRibonuclease H-like(2484.1.1)

FFamilyrve(2484.1.1.9)

Ligands

in contact, ≤ 4 Å

(1-methyl-5-phenyl-1H-pyrazol-4-yl)methanolBCK
Cadmium ionCD
metal

+ 1 additive (Sulfate ion)

Sulfate ionSO4

Pfam Families

Integrase core domain

ClanCL0219RNase_H

External Links

ECOD PDB View: 3VQ6 RCSB PDB: 3VQ6 PDBe: 3VQ6 UniProt: Q72498

Downloads

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DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.