ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4g0rA1 - ECOD Domain | ECOD

ECOD/Domains/e4g0rA1

e4g0rA1

UID: 000222950

PDB

Range: A:38-593
PDB: 4G0R chain A(all domains)
UniProt: P03136 (all domains)

Molecule: Capsid protein VP1

3D Structure

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Related Domains

Browse other domains in Parvo_coat →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupNucleoplasmin-like/VP (viral coat and capsid proteins)(10.2)

TT-groupNucleoplasmin-like/VP (viral coat and capsid proteins)(10.2.1)

FFamilyParvo_coat(10.2.1.9)

Ligands

in contact, ≤ 4 Å

2'-Deoxycytidine-5'-MonophosphateDC
drugDrugBank DB03798
Chloride ionCL
Magnesium ionMG

Pfam Families

Parvovirus coat protein VP1/VP2

ClanCL0605ssDNA_NP_VP

External Links

ECOD PDB View: 4G0R RCSB PDB: 4G0R PDBe: 4G0R UniProt: P03136

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

metal

Sodium ionNA

metal

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.