ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5y5sI1 - ECOD Domain | ECOD

ECOD/Domains/e5y5sI1

e5y5sI1

UID: 002320424

PDB

Range: I:3-59
PDB: 5Y5S chain I(all domains)
UniProt: D2Z0P2 (all domains)
Gene: pufA

Molecule: LH1 alpha polypeptide

3D Structure

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Related Domains

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Classification

AArchitectureextended segments(a.20)

XX-groupBacterial light-harvesting complex subunits(5074)

HH-groupBacterial light-harvesting complex subunits(5074.1)

TT-groupBacterial light-harvesting complex subunits(5074.1.1)

FFamilyLHC(5074.1.1.1)

Ligands

in contact, ≤ 4 Å

Bacteriochlorophyll ABCL
drugDrugBank DB01853
1,2-dihexadecanoyl-sn-glycero-3-phosphoethanolaminePEF
drugDrugBank DB01728

Pfam Families

Antenna complex alpha/beta subunit

External Links

ECOD PDB View: 5Y5S RCSB PDB: 5Y5S PDBe: 5Y5S UniProt: D2Z0P2

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Calcium ionCA

metal

SpirilloxanthinCRT

+ 2 additives (Dodecyldimethylamine N-oxide, Dodecyl-beta-d-maltoside)

Dodecyldimethylamine N-oxideLDA
DrugBank DB04147within 5 Å only
Dodecyl-beta-d-maltosideLMT
within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.