ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5ybbB1 - ECOD Domain | ECOD

ECOD/Domains/e5ybbB1

e5ybbB1

UID: 002322908

PDB

Range: B:167-496
PDB: 5YBB chain B(all domains)
UniProt: Q8R9Q4 (all domains)
Gene: HsdM

Molecule: site-specific DNA-methyltransferase (adenine-specific) (EC 2.1.1.72)

3D Structure

Loading viewer...

Related Domains

Browse other domains in N6_Mtase →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupS-adenosyl-L-methionine-dependent methyltransferases(2003.1.5)

FFamilyN6_Mtase(2003.1.5.22)

Pfam Families

PF02384N6_Mtase

N-6 DNA Methylase

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 5YBB RCSB PDB: 5YBB PDBe: 5YBB UniProt: Q8R9Q4

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure