ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e1uwvA4 - ECOD Domain | ECOD

ECOD/Domains/e1uwvA4

e1uwvA4

UID: 002323716

RepresentativePDB

Range: A:75-125,A:246-432
PDB: 1UWV chain A(all domains)
UniProt: P55135 (all domains)
Gene: rlmD

Molecule: 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD (EC 2.1.1.190) (23S rRNA(m5U1939)-methyltransferase)

3D Structure

Loading viewer...

Related Domains

Browse other domains in tRNA_U5-meth_tr →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupS-adenosyl-L-methionine-dependent methyltransferases(2003.1.5)

FFamilytRNA_U5-meth_tr(2003.1.5.53)

Pfam Families

PF05958tRNA_U5-meth_tr

tRNA (Uracil-5-)-methyltransferase

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 1UWV RCSB PDB: 1UWV PDBe: 1UWV UniProt: P55135

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure