ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5zdzN2 - ECOD Domain | ECOD

ECOD/Domains/e5zdzN2

e5zdzN2

UID: 002327700

PDB

Range: N:11-75
PDB: 5ZDZ chain N(all domains)
UniProt: P63158 (all domains)
Gene: Hmgb1

Molecule: High mobility group protein B1 (High mobility group protein 1) (HMG-1)

3D Structure

Loading viewer...

Related Domains

Browse other domains in HMG_box_2 →

Classification

AArchitecturealpha arrays(a.6)

XX-groupHMG-box-like(190)

HH-groupHMG-box(190.1)

TT-groupHMG-box(190.1.1)

FFamilyHMG_box_2(190.1.1.3)

Pfam Families

PF09011HMG_box_2

HMG-box domain

ClanCL0114HMG-box

External Links

ECOD PDB View: 5ZDZ RCSB PDB: 5ZDZ PDBe: 5ZDZ UniProt: P63158

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure