ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6ej1A1 - ECOD Domain | ECOD

ECOD/Domains/e6ej1A1

e6ej1A1

UID: 002328132

PDB

Range: A:669-754
PDB: 6EJ1 chain A(all domains)
UniProt: Q9UGL1 (all domains)
Gene: KDM5B

Molecule: Lysine-specific demethylase 5B,Lysine-specific demethylase 5B

3D Structure

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Related Domains

Browse other domains in zf-C5HC2 →

Classification

AArchitecturefew secondary structure elements(a.19)

XX-groupGlucocorticoid receptor-like(377)

HH-groupLIM domain-like(377.1)

TT-groupLIM domain-like(377.1.1)

FFamilyzf-C5HC2(377.1.1.12)

Ligands

in contact, ≤ 4 Å

Zinc ionZN
metal

+ 1 additive (Dimethyl sulfoxide)

Dimethyl sulfoxideDMS
DrugBank DB01093

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF02928zf-C5HC2

C5HC2 zinc finger

External Links

ECOD PDB View: 6EJ1 RCSB PDB: 6EJ1 PDBe: 6EJ1 UniProt: Q9UGL1

Downloads

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