ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5o6hA1 - ECOD Domain | ECOD

ECOD/Domains/e5o6hA1

e5o6hA1

UID: 002330048

PDB

Range: A:115-295
PDB: 5O6H chain A(all domains)
UniProt: P30419 (all domains)
Gene: NMT1

Molecule: Glycylpeptide N-tetradecanoyltransferase 1

3D Structure

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Related Domains

Browse other domains in NMT →

Classification

AArchitecturea+b three layers(a.12)

XX-groupNat/Ivy(213)

HH-groupAcyl-CoA N-acyltransferases (Nat)(213.1)

TT-groupAcyl-CoA N-acyltransferases (Nat)(213.1.1)

FFamilyNMT(213.1.1.4)

Ligands

in contact, ≤ 4 Å

Myristoyl-CoaMYA
drugDrugBank DB02180
1-[5-[4-fluoranyl-2-[2-(1,3,5-trimethylpyrazol-4-yl)ethoxy]phenyl]-2~{H}-indazol-3-yl]-~{N},~{N}-dimethyl-methanamine9M2
Magnesium ion

Pfam Families

Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain

ClanCL0257Acetyltrans

External Links

ECOD PDB View: 5O6H RCSB PDB: 5O6H PDBe: 5O6H UniProt: P30419

Downloads

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metal

+ 3 additives (Glycerin, Phosphate ion, Dimethyl sulfoxide)

GlycerinGOL
DrugBank DB09462
Phosphate ionPO4
DrugBank DB14523
Dimethyl sulfoxideDMS
DrugBank DB01093within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.