ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6d1qB1 - ECOD Domain | ECOD

ECOD/Domains/e6d1qB1

e6d1qB1

UID: 002330425

PDB

Range: B:0-159
PDB: 6D1Q chain B(all domains)
UniProt: B7MLH6 (all domains)
Gene: rppH

Molecule: RNA pyrophosphohydrolase

3D Structure

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Related Domains

Browse other domains in NUDIX →

Classification

AArchitecturea+b two layers(a.11)

XX-groupbeta-Grasp(221)

HH-groupNudix(221.4)

TT-groupNudix(221.4.1)

FFamilyNUDIX(221.4.1.1)

Ligands

in contact, ≤ 4 Å

Chloride ionCL
within 5 Å only

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

NUDIX domain

ClanCL0261NUDIX

External Links

ECOD PDB View: 6D1Q RCSB PDB: 6D1Q PDBe: 6D1Q UniProt: B7MLH6

Downloads

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