ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5ntcD2 - ECOD Domain | ECOD

ECOD/Domains/e5ntcD2

e5ntcD2

UID: 002332638

PDB

Range: D:146-289
PDB: 5NTC chain D(all domains)
UniProt: Q9WVG6 (all domains)
Gene: Carm1

Molecule: Histone-arginine methyltransferase CARM1

3D Structure

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Related Domains

Browse other domains in PrmA →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupS-adenosyl-L-methionine-dependent methyltransferases(2003.1.5)

FFamilyPrmA(2003.1.5.55)

Ligands

in contact, ≤ 4 Å

2-[3-(2-Hydroxy-1,1-Dihydroxymethyl-Ethylamino)-Propylamino]-2-Hydroxymethyl-Propane-1,3-DiolB3P
drugDrugBank DB02676
[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-(2-azaniumylethyl)-[(3~{S})-3-azaniumyl-4-oxidanyl-4-oxidanylidene-butyl]azanium6L7

Pfam Families

Ribosomal protein L11 methyltransferase (PrmA)

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 5NTC RCSB PDB: 5NTC PDBe: 5NTC UniProt: Q9WVG6

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.