ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6ccvF2 - ECOD Domain | ECOD

ECOD/Domains/e6ccvF2

e6ccvF2

UID: 002390853

PDB

Range: F:330-332,F:359-466
PDB: 6CCV chain F(all domains)
UniProt: A0QW02 (all domains)
Gene: sigA

Molecule: RNA polymerase sigma factor SigA

3D Structure

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Related Domains

Browse other domains in Sigma70_r3,Sigma70_r4 →

Classification

AArchitecturealpha arrays(a.6)

XX-groupHTH(101)

HH-groupHTH(101.1)

TT-groupThree-helical HTH(101.1.1)

FFamilySigma70_r3,Sigma70_r4(101.1.1.30)

Ligands

in contact, ≤ 4 Å

RifampinRFP
drugDrugBank DB01045

+ 2 additives (Sulfate ion, 1,2-ETHANEDIOL)

Sulfate ionSO4
DrugBank DB14546

Pfam Families

PF04539Sigma70_r3

Sigma-70 region 3

ClanCL0123HTH

PF04545Sigma70_r4

Sigma-70, region 4

ClanCL0123HTH

External Links

ECOD PDB View: 6CCV RCSB PDB: 6CCV PDBe: 6CCV UniProt: A0QW02

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

1,2-ETHANEDIOL

Shown in the structure viewer. Drug annotations from DrugDomain.