ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6gmqI1 - ECOD Domain | ECOD

ECOD/Domains/e6gmqI1

e6gmqI1

UID: 002391402

PDB

Range: I:62-154
PDB: 6GMQ chain I(all domains)
UniProt: P40337 (all domains)
Gene: VHL

Molecule: von Hippel-Lindau disease tumor suppressor

3D Structure

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Related Domains

Browse other domains in VHL →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupImmunoglobulin-like beta-sandwich(11)

HH-groupImmunoglobulin-related(11.1)

TT-groupPrealbumin-like(11.1.4)

FFamilyVHL(11.1.4.9)

Ligands

in contact, ≤ 4 Å

(4-pyrrol-1-ylphenyl)methanolF4K

+ 2 additives (Isopropyl alcohol, Acetate)

Isopropyl alcoholIPA
DrugBank DB02325
AcetateACT

Pfam Families

VHL beta domain

ClanCL0287Transthyretin

External Links

ECOD PDB View: 6GMQ RCSB PDB: 6GMQ PDBe: 6GMQ UniProt: P40337

Downloads

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DrugBank DB14511within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.