ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5omeA1 - ECOD Domain | ECOD

ECOD/Domains/e5omeA1

e5omeA1

UID: 002391925

PDB

Range: A:0-53
PDB: 5OME chain A(all domains)
UniProt: P24297 (all domains)
Gene: rub

Molecule: Rubredoxin

3D Structure

Loading viewer...

Related Domains

Browse other domains in Rubredoxin →

Classification

AArchitecturefew secondary structure elements(a.19)

XX-groupRubredoxin-like(375)

HH-groupRubredoxin-related(375.1)

TT-groupRubredoxin-related(375.1.1)

FFamilyRubredoxin(375.1.1.2)

Ligands

in contact, ≤ 4 Å

FE (III) IONFE
metal
Sodium ionNA
metal

+ 1 additive (Phosphate ion)

Phosphate ionPO4

Pfam Families

PF00301Rubredoxin

Rubredoxin

ClanCL0167Zn_Beta_Ribbon

External Links

ECOD PDB View: 5OME RCSB PDB: 5OME PDBe: 5OME UniProt: P24297

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB14523

Shown in the structure viewer. Drug annotations from DrugDomain.