ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6hfvB1 - ECOD Domain | ECOD

ECOD/Domains/e6hfvB1

e6hfvB1

UID: 002392674

PDB

Range: B:195-268,B:298-461
PDB: 6HFV chain B(all domains)
UniProt: P9WJF1 (all domains)
Gene: dprE1

Molecule: Decaprenylphosphoryl-beta-D-ribose oxidase

3D Structure

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Related Domains

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Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupFAD-linked oxidases, C-terminal domain(304.6)

TT-groupFAD-linked oxidases, C-terminal domain(304.6.1)

FFamilyALO(304.6.1.2)

Ligands

in contact, ≤ 4 Å

Flavin adenine dinucleotideFAD
drugDrugBank DB03147
8-(oxidanylamino)-2-piperidin-1-yl-6-(trifluoromethyl)-1,3-benzothiazin-4-oneG1T
within 5 Å only

+ 1 additive (Imidazole)

Pfam Families

D-arabinono-1,4-lactone oxidase

ClanCL0277FAD-oxidase_C

External Links

ECOD PDB View: 6HFV RCSB PDB: 6HFV PDBe: 6HFV UniProt: P9WJF1

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

ImidazoleIMD
DrugBank DB03366

Shown in the structure viewer. Drug annotations from DrugDomain.