ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e6b8oD1 - ECOD Domain | ECOD

ECOD/Domains/e6b8oD1

e6b8oD1

UID: 002395941

PDB

Range: D:21-130
PDB: 6B8O chain D(all domains)
UniProt: Q9NZC2 (all domains)
Gene: TREM2

Molecule: Triggering receptor expressed on myeloid cells 2

3D Structure

Loading viewer...

Related Domains

Browse other domains in V-set →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupImmunoglobulin-like beta-sandwich(11)

HH-groupImmunoglobulin-related(11.1)

TT-groupImmunoglobulin/Fibronectin type III/E set domains/PapD-like(11.1.1)

FFamilyV-set(11.1.1.99)

Ligands

in contact, ≤ 4 Å

N-AcetylglucosamineNAG
drugDrugBank DB00141
1,2-DICAPROYL-SN-PHOSPHATIDYL-L-SERINEPSF

+ 2 additives (Sulfate ion, 1,2-ETHANEDIOL)

Sulfate ion

Pfam Families

Immunoglobulin V-set domain

ClanCL0159E-set

External Links

ECOD PDB View: 6B8O RCSB PDB: 6B8O PDBe: 6B8O UniProt: Q9NZC2

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB14546

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.