ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6c6qA1 - ECOD Domain | ECOD

ECOD/Domains/e6c6qA1

e6c6qA1

UID: 002396658

PDB

Range: A:229-531
PDB: 6C6Q chain A(all domains)
UniProt: Q80J94 (all domains)
Gene: ORF2

Molecule: Capsid protein VP1

3D Structure

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Related Domains

Browse other domains in Calici_coat_C →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupNucleoplasmin-like/VP (viral coat and capsid proteins)(10.2)

TT-groupNucleoplasmin-like/VP (viral coat and capsid proteins)(10.2.1)

FFamilyCalici_coat_C(10.2.1.43)

Ligands

in contact, ≤ 4 Å

Chloride ionCL
Magnesium ionMG
metal

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOLEDO

Pfam Families

PF08435Calici_coat_C

Calicivirus coat protein C-terminal

ClanCL0055Nucleoplasmin

External Links

ECOD PDB View: 6C6Q RCSB PDB: 6C6Q PDBe: 6C6Q UniProt: Q80J94

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.