ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6dbrC1 - ECOD Domain | ECOD

ECOD/Domains/e6dbrC1

e6dbrC1

UID: 002398223

PDB

Range: C:814-979
PDB: 6DBR chain C(all domains)
UniProt: O13033 (all domains)
Gene: rag1

Molecule: Recombination activating gene 1 - MBP chimera

3D Structure

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Related Domains

Browse other domains in RAG1_ZnH2 →

Classification

AArchitecturealpha bundles(a.7)

XX-groupV(D)J recombination-activating protein 1 helical bundle domain(3948)

HH-groupV(D)J recombination-activating protein 1 helical bundle domain(3948.1)

TT-groupV(D)J recombination-activating protein 1 helical bundle domain(3948.1.1)

FFamilyRAG1_ZnH2(3948.1.1.3)

Ligands

in contact, ≤ 4 Å

Zinc ionZN
metal
Calcium ionCA
metalwithin 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF26104RAG1_ZnH2

Recombination-activation protein 1 (RAG1) ZnH2 domain

External Links

ECOD PDB View: 6DBR RCSB PDB: 6DBR PDBe: 6DBR UniProt: O13033

Downloads

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