ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6dm1B2 - ECOD Domain | ECOD

ECOD/Domains/e6dm1B2

e6dm1B2

UID: 002398837

PDB

Range: B:512-543,B:567-998
PDB: 6DM1 chain B(all domains)
UniProt: P19491 (all domains)
Gene: Gria2

Molecule: Glutamate receptor 2,Voltage-dependent calcium channel gamma-2 subunit

3D Structure

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Related Domains

Browse other domains in Lig_chan →

Classification

AArchitecturealpha complex topology(a.10)

XX-groupVoltage-gated ion channels(5054)

HH-groupVoltage-gated ion channels(5054.1)

TT-groupVoltage-gated ion channels(5054.1.1)

FFamilyLig_chan(5054.1.1.1)

Ligands

in contact, ≤ 4 Å

CyclothiazideCYZ
drugDrugBank DB00606
Glutamic acidGLU
drugDrugBank DB00142
N-[3-({4-[(3-aminopropyl)amino]butyl}amino)propyl]-2-(naphthalen-1-yl)acetamide

Pfam Families

PF00060Lig_chan

Ligand-gated ion channel

ClanCL0030Ion_channel

External Links

ECOD PDB View: 6DM1 RCSB PDB: 6DM1 PDBe: 6DM1 UniProt: P19491

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.