ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6dm1C5 - ECOD Domain | ECOD

ECOD/Domains/e6dm1C5

e6dm1C5

UID: 002398845

PDB

Range: C:386-511
PDB: 6DM1 chain C(all domains)
UniProt: P19491 (all domains)
Gene: Gria2

Molecule: Glutamate receptor 2,Voltage-dependent calcium channel gamma-2 subunit

3D Structure

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Related Domains

Browse other domains in Lig_chan-Glu_bd →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPeriplasmic binding protein-like II(7523)

HH-groupPeriplasmic binding protein-like II(7523.1)

TT-groupPeriplasmic binding protein-like II(7523.1.1)

FFamilyLig_chan-Glu_bd(7523.1.1.20)

Ligands

in contact, ≤ 4 Å

CyclothiazideCYZ
drugDrugBank DB00606
Glutamic acidGLU
drugDrugBank DB00142

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF10613Lig_chan-Glu_bd

Ligated ion channel L-glutamate- and glycine-binding site

ClanCL0177PBP

External Links

ECOD PDB View: 6DM1 RCSB PDB: 6DM1 PDBe: 6DM1 UniProt: P19491

Downloads

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