ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e6emuC1 - ECOD Domain | ECOD

ECOD/Domains/e6emuC1

e6emuC1

UID: 002400358

PDB

Range: C:99-272
PDB: 6EMU chain C(all domains)
UniProt: Q5JD38 (all domains)
Gene: TK0422

Molecule: tRNA (guanine(9)-/adenine(9)-N1)-methyltransferase

3D Structure

Loading viewer...

Related Domains

Browse other domains in TRM10_TRM10A →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupalpha/beta knot(2488)

HH-groupalpha/beta knot(2488.1)

TT-groupalpha/beta knot(2488.1.1)

FFamilyTRM10_TRM10A(2488.1.1.19)

Ligands

in contact, ≤ 4 Å

AdemetionineSAM
drugDrugBank DB00118

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Shown in the structure viewer.

Pfam Families

PF27710TRM10_TRM10A

tRNA (guanine(9)-N(1))-methyltransferase TRM10/TRM10A

ClanCL0098SPOUT

External Links

ECOD PDB View: 6EMU RCSB PDB: 6EMU PDBe: 6EMU UniProt: Q5JD38

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Drug annotations from DrugDomain.