ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5w4qA2 - ECOD Domain | ECOD

ECOD/Domains/e5w4qA2

e5w4qA2

UID: 002406418

PDB

Range: A:1-146
PDB: 5W4Q chain A(all domains)
UniProt: P12493 (all domains)
Gene: gag

Molecule: Capsid protein p24

3D Structure

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Related Domains

Browse other domains in Gag_p24 →

Classification

AArchitecturealpha bundles(a.7)

XX-groupRetrovirus capsid protein(170)

HH-groupRetrovirus capsid protein N-terminal domain(170.2)

TT-groupRetrovirus capsid protein N-terminal domain(170.2.1)

FFamilyGag_p24(170.2.1.1)

Ligands

in contact, ≤ 4 Å

Chloride ionCL
Iodide ionIOD

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00607Gag_p24

gag protein p24 N-terminal domain

ClanCL0148Viral_Gag

External Links

ECOD PDB View: 5W4Q RCSB PDB: 5W4Q PDBe: 5W4Q UniProt: P12493

Downloads

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