ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5xkhA1 - ECOD Domain | ECOD

ECOD/Domains/e5xkhA1

e5xkhA1

UID: 002406811

PDB

Range: A:1-244
PDB: 5XKH chain A(all domains)
UniProt: Q2XVP4 (all domains)
Gene: TUBA1B

Molecule: Tubulin alpha-1B chain

3D Structure

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Related Domains

Browse other domains in Tubulin →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupTubulin nucleotide-binding domain-like(2003.1.6)

FFamilyTubulin(2003.1.6.1)

Ligands

in contact, ≤ 4 Å

Guanosine-5'-TriphosphateGTP
drugDrugBank DB04137
4-[(4-methoxy-3-oxidanyl-phenyl)-methyl-amino]chromen-2-one89C
Calcium ionCA

Pfam Families

PF00091Tubulin

Tubulin/FtsZ family, GTPase domain

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 5XKH RCSB PDB: 5XKH PDBe: 5XKH UniProt: Q2XVP4

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

metal

Magnesium ionMG

metal

+ 2 additives (Glycerin, 2-(N-morpholino)ethanesulfonic acid)

GlycerinGOL
DrugBank DB09462
2-(N-morpholino)ethanesulfonic acidMES
DrugBank DB03814within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.