ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5ypeD1 - ECOD Domain | ECOD

ECOD/Domains/e5ypeD1

e5ypeD1

UID: 002407833

PDB

Range: D:2-45
PDB: 5YPE chain D(all domains)
UniProt: Q13501 (all domains)
Gene: SQSTM1

Molecule: 78 kDa glucose-regulated protein,Sequestosome-1

3D Structure

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Related Domains

Browse other domains in ZZ →

Classification

AArchitecturefew secondary structure elements(a.19)

XX-groupRING/U-box-like(376)

HH-groupRING/U-box-like(376.1)

TT-groupRING/U-box(376.1.1)

FFamilyZZ(376.1.1.3)

Ligands

in contact, ≤ 4 Å

Zinc ionZN
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Zinc finger, ZZ type

ClanCL0229RING

External Links

ECOD PDB View: 5YPE RCSB PDB: 5YPE PDBe: 5YPE UniProt: Q13501

Downloads

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