ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5yrvD1 - ECOD Domain | ECOD

ECOD/Domains/e5yrvD1

e5yrvD1

UID: 002407923

PDB

Range: D:1-551
PDB: 5YRV chain D(all domains)
UniProt: Q59470 (all domains)
Gene: pddA

Molecule: Diol dehydrase alpha subunit

3D Structure

Loading viewer...

Related Domains

Browse other domains in Dehydratase_LU →

Classification

AArchitecturea/b barrels(a.16)

XX-groupTIM beta/alpha-barrel(2002)

HH-groupTIM barrels(2002.1)

TT-groupTIM barrels(2002.1.1)

FFamilyDehydratase_LU(2002.1.1.91)

Ligands

in contact, ≤ 4 Å

(S)-propane-1,2-diolPGO
drugDrugBank DB04349
5'-DEOXYADENOSINE5AD
CobalaminB12

Pfam Families

PF02286Dehydratase_LU

Dehydratase large subunit

ClanCL0036TIM_barrel

External Links

ECOD PDB View: 5YRV RCSB PDB: 5YRV PDBe: 5YRV UniProt: Q59470

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Calcium ionCA

metal

Chloride ionCL

Potassium ionK

metal

Shown in the structure viewer. Drug annotations from DrugDomain.