ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5zctF1 - ECOD Domain | ECOD

ECOD/Domains/e5zctF1

e5zctF1

UID: 002408534

PDB

Range: F:89-292
PDB: 5ZCT chain F(all domains)
UniProt: P0C0U4 (all domains)
Gene: rimK

Molecule: Ribosomal protein S6--L-glutamate ligase

3D Structure

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Related Domains

Browse other domains in RimK →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupProtein kinase/SAICAR synthase/ATP-grasp(206)

HH-groupProtein kinase/SAICAR synthase/ATP-grasp(206.1)

TT-groupATP-grasp(206.1.3)

FFamilyRimK(206.1.3.21)

Ligands

in contact, ≤ 4 Å

Phosphoaminophosphonic acid-adenylate esterANP
Magnesium ionMG
metal

+ 1 additive (Sulfate ion)

Sulfate ionSO4

Pfam Families

RimK-like ATP-grasp domain

ClanCL0179ATP-grasp

External Links

ECOD PDB View: 5ZCT RCSB PDB: 5ZCT PDBe: 5ZCT UniProt: P0C0U4

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.