ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5ypdA1 - ECOD Domain | ECOD

ECOD/Domains/e5ypdA1

e5ypdA1

UID: 002417318

PDB

Range: A:4-285
PDB: 5YPD chain A(all domains)
UniProt: A5U6L5 (all domains)
Gene: mapB

Molecule: Methionine aminopeptidase

3D Structure

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Related Domains

Browse other domains in Peptidase_M24 →

Classification

AArchitecturea+b duplicates or obligate multimers(a.15)

XX-groupCreatinase/aminopeptidase-like(283)

HH-groupCreatinase/aminopeptidase(283.1)

TT-groupCreatinase/aminopeptidase(283.1.1)

FFamilyPeptidase_M24(283.1.1.1)

Ligands

in contact, ≤ 4 Å

MethionineMET
drugDrugBank DB00134
Chloride ionCL
COBALT (II) IONCO

Pfam Families

PF00557Peptidase_M24

Metallopeptidase family M24

External Links

ECOD PDB View: 5YPD RCSB PDB: 5YPD PDBe: 5YPD UniProt: A5U6L5

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

metal

Sodium ionNA

metal

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.