ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5kk5A1 - ECOD Domain | ECOD

ECOD/Domains/e5kk5A1

e5kk5A1

UID: 002417945

PDB

Range: A:49-319
PDB: 5KK5 chain A(all domains)
UniProt: U2UMQ6 (all domains)
Gene: cas12a

Molecule: CRISPR-associated endonuclease Cas12a (EC 3.1.21.1) (EC 4.6.1.22) (AsCpf1) (CRISPR-associated endonuclease Cpf1)

3D Structure

Loading viewer...

Related Domains

Browse other domains in REC1 →

Classification

AArchitecturealpha complex topology(a.10)

XX-groupCRISPR-associated endonuclease first helical domain(1070)

HH-groupCRISPR-associated endonuclease Cpf1 first helical domain(1070.1)

TT-groupCRISPR-associated endonuclease Cpf1 first helical domain(1070.1.1)

FFamilyREC1(1070.1.1.1)

Pfam Families

Alpha helical recognition lobe domain

External Links

ECOD PDB View: 5KK5 RCSB PDB: 5KK5 PDBe: 5KK5 UniProt: U2UMQ6

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure