ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5o0oB1 - ECOD Domain | ECOD

ECOD/Domains/e5o0oB1

e5o0oB1

UID: 002417957

PDB

Range: B:26-309
PDB: 5O0O chain B(all domains)
UniProt: Q99PI8 (all domains)
Gene: Rtn4r

Molecule: Reticulon-4 receptor

3D Structure

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Related Domains

Browse other domains in LRR_1, LRR_5, LRR_8 →

Classification

AArchitecturebeta duplicates or obligate multimers(a.4)

XX-groupSingle-stranded right-handed beta-helix(207)

HH-groupLeucine-rich repeats(207.1)

TT-groupLeucine-rich repeats(207.1.1)

FFamilyLRR_1, LRR_5, LRR_8(207.1.1.130)

Ligands

in contact, ≤ 4 Å

N-AcetylglucosamineNAG
drugDrugBank DB00141
Chloride ionCL

+ 1 additive (Glycerin)

Glycerin

Pfam Families

Leucine Rich Repeat

ClanCL0022LRR

BspA type Leucine rich repeat region (6 copies)

ClanCL0022LRR

Leucine rich repeat

ClanCL0022LRR

External Links

ECOD PDB View: 5O0O RCSB PDB: 5O0O PDBe: 5O0O UniProt: Q99PI8

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.