ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5ytoA1 - ECOD Domain | ECOD

ECOD/Domains/e5ytoA1

e5ytoA1

UID: 002418747

PDB

Range: A:-1-153
PDB: 5YTO chain A(all domains)
UniProt: P00441 (all domains)
Gene: SOD1

Molecule: Superoxide dismutase [Cu-Zn]

3D Structure

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Related Domains

Browse other domains in Sod_Cu →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupImmunoglobulin-like beta-sandwich(11)

HH-groupImmunoglobulin-related(11.1)

TT-groupCu,Zn superoxide dismutase-like(11.1.3)

FFamilySod_Cu(11.1.3.1)

Ligands

in contact, ≤ 4 Å

Pentasulfide-SulfurPS5
drugDrugBank DB02956
Zinc ionZN
metal

+ 1 additive (Glycerin)

Pfam Families

Copper/zinc superoxide dismutase (SODC)

External Links

ECOD PDB View: 5YTO RCSB PDB: 5YTO PDBe: 5YTO UniProt: P00441

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Glycerin

DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.