ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6i7vDM1 - ECOD Domain | ECOD

ECOD/Domains/e6i7vDM1

e6i7vDM1

UID: 002426915

PDB

Range: DM:1-144
PDB: 6I7V chain DM(all domains)
UniProt: P02413 (all domains)
Gene: rplO

Molecule: 50S ribosomal protein L15

3D Structure

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Related Domains

Browse other domains in Ribosomal_L27A, Ribosomal_uL15_N →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRibosomal protein L13/L15p/L18e/L32e(2490)

HH-groupRibosomal proteins L15p and L18e(2490.3)

TT-groupRibosomal proteins L15p and L18e(2490.3.1)

FFamilyRibosomal_L27A, Ribosomal_uL15_N(2490.3.1.3)

Ligands

in contact, ≤ 4 Å

PutrescinePUT
drugDrugBank DB01917
Magnesium ionMG
metal

+ 1 additive ((4S)-2-METHYL-2,4-PENTANEDIOL)

Pfam Families

PF00828Ribosomal_L27A

Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A

ClanCL0588Ribos_L15p_L18e

PF29471Ribosomal_uL15_N

Ribosomal protein uL15, N-terminal region

External Links

ECOD PDB View: 6I7V RCSB PDB: 6I7V PDBe: 6I7V UniProt: P02413

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

(4S)-2-METHYL-2,4-PENTANEDIOLMPD

Shown in the structure viewer. Drug annotations from DrugDomain.