ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6fpiM2 - ECOD Domain | ECOD

ECOD/Domains/e6fpiM2

e6fpiM2

UID: 002431944

PDB

Range: M:2-54,M:542-582
PDB: 6FPI chain M(all domains)
UniProt: P0ACD8 (all domains)
Gene: hyaB

Molecule: Hydrogenase-1 large chain

3D Structure

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Related Domains

Browse other domains in NiFeSe_Hases, HoxH →

Classification

AArchitecturea+b two layers(a.11)

XX-groupFAD-linked reductases, C-terminal domain-like(244)

HH-groupNi-Fe binding domain in nickel-iron hydrogenase large subunit(244.4)

TT-groupNi-Fe binding domain in nickel-iron hydrogenase large subunit(244.4.1)

FFamilyNiFeSe_Hases, HoxH(244.4.1.3)

Ligands

in contact, ≤ 4 Å

Ni-fe reduced active centerEJ2
Magnesium ionMG
metal
FE4-S3 CLUSTERSF3

Pfam Families

PF00374NiFeSe_Hases

Nickel-dependent hydrogenase

HoxL-like

External Links

ECOD PDB View: 6FPI RCSB PDB: 6FPI PDBe: 6FPI UniProt: P0ACD8

Downloads

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within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.