ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6h6yC1 - ECOD Domain | ECOD

ECOD/Domains/e6h6yC1

e6h6yC1

UID: 002432224

PDB

Range: C:229-516
PDB: 6H6Y chain C(all domains)
UniProt: Q83884 (all domains)
Gene: ORF2

Molecule: Capsid protein VP1

3D Structure

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Related Domains

Browse other domains in Calicivirus coat protein / Calicivirus coat protein C-terminal →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupNucleoplasmin-like/VP (viral coat and capsid proteins)(10.2)

TT-groupNucleoplasmin-like/VP (viral coat and capsid proteins)(10.2.1)

FFamilyCalicivirus coat protein / Calicivirus coat protein C-terminal(10.2.1.14)

Ligands

in contact, ≤ 4 Å

Chloride ionCL
Sodium ionNA
metal

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOLEDO

Shown in the structure viewer.

Pfam Families

PF00915Calici_coat

Calicivirus coat protein

ClanCL0055Nucleoplasmin

PF08435Calici_coat_C

Calicivirus coat protein C-terminal

ClanCL0055Nucleoplasmin

External Links

ECOD PDB View: 6H6Y RCSB PDB: 6H6Y PDBe: 6H6Y UniProt: Q83884

Downloads

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Drug annotations from DrugDomain.