ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5zyuB1 - ECOD Domain | ECOD

ECOD/Domains/e5zyuB1

e5zyuB1

UID: 002440831

PDB

Range: B:99-336
PDB: 5ZYU chain B(all domains)
UniProt: Q9BQP7 (all domains)
Gene: MGME1

Molecule: Mitochondrial genome maintenance exonuclease 1 (EC 3.1.-.-)

3D Structure

Loading viewer...

Related Domains

Browse other domains in PDDEXK_1 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRestriction endonuclease-like(2008)

HH-groupRestriction endonuclease-like(2008.1)

TT-groupRestriction endonuclease-like(2008.1.1)

FFamilyPDDEXK_1(2008.1.1.59)

Pfam Families

PF12705PDDEXK_1

PD-(D/E)XK nuclease superfamily

ClanCL0236PDDEXK

External Links

ECOD PDB View: 5ZYU RCSB PDB: 5ZYU PDBe: 5ZYU UniProt: Q9BQP7

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure