ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e6g2yA1 - ECOD Domain | ECOD

ECOD/Domains/e6g2yA1

e6g2yA1

UID: 002470671

PDB

Range: A:468-648
PDB: 6G2Y chain A(all domains)
UniProt: P55072 (all domains)
Gene: VCP

Molecule: Transitional endoplasmic reticulum ATPase

3D Structure

Loading viewer...

Related Domains

Browse other domains in AAA, RuvB_N →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupP-loop domains-like(2004)

HH-groupP-loop domains-related(2004.1)

TT-groupP-loop containing nucleoside triphosphate hydrolases(2004.1.1)

FFamilyAAA, RuvB_N(2004.1.1.415)

Ligands

in contact, ≤ 4 Å

Adenosine disphosphateADP
drugDrugBank DB16833
[3,4-bis(fluoranyl)phenyl]-(4-methylpiperazin-1-yl)methanoneELQ
Sodium ionNA

Pfam Families

ATPase family associated with various cellular activities (AAA)

ClanCL0023P-loop_NTPase

Holliday junction DNA helicase RuvB P-loop domain

ClanCL0023P-loop_NTPase

External Links

ECOD PDB View: 6G2Y RCSB PDB: 6G2Y PDBe: 6G2Y UniProt: P55072

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

metal

+ 2 additives (Dimethyl sulfoxide, (4r)-2-Methylpentane-2,4-Diol)

Dimethyl sulfoxideDMS
DrugBank DB01093
(4r)-2-Methylpentane-2,4-DiolMPD
DrugBank DB03564

Shown in the structure viewer. Drug annotations from DrugDomain.