ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6d1kA1 - ECOD Domain | ECOD

ECOD/Domains/e6d1kA1

e6d1kA1

UID: 002473959

PDB

Range: A:42-270
PDB: 6D1K chain A(all domains)
UniProt: C7C422 (all domains)
Gene: blaNDM-1

Molecule: Metallo-beta-lactamase type 2

3D Structure

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Related Domains

Browse other domains in Lactamase_B →

Classification

AArchitecturea+b four layers(a.13)

XX-groupMetallo-hydrolase/oxidoreductase(247)

HH-groupMetallo-hydrolase/oxidoreductase(247.1)

TT-groupMetallo-hydrolase/oxidoreductase(247.1.1)

FFamilyLactamase_B(247.1.1.1)

Ligands

in contact, ≤ 4 Å

[(quinolin-8-yl)methyl]phosphonic acidM3Q
Zinc ionZN
metal

+ 1 additive (Acetate)

AcetateACT

Pfam Families

PF00753Lactamase_B

Metallo-beta-lactamase superfamily

ClanCL0381Metallo-HOrase

External Links

ECOD PDB View: 6D1K RCSB PDB: 6D1K PDBe: 6D1K UniProt: C7C422

Downloads

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DrugBank DB14511

Shown in the structure viewer. Drug annotations from DrugDomain.