ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6gafA1 - ECOD Domain | ECOD

ECOD/Domains/e6gafA1

e6gafA1

UID: 002476149

PDB

Range: A:4-234
PDB: 6GAF chain A(all domains)
UniProt: P02945 (all domains)
Gene: bop

Molecule: Bacteriorhodopsin

3D Structure

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Related Domains

Browse other domains in Bac_rhodopsin →

Classification

AArchitecturealpha bundles(a.7)

XX-groupFamily A G protein-coupled receptor-like(5001)

HH-groupFamily A G protein-coupled receptor-like(5001.1)

TT-groupFamily A G protein-coupled receptor-like(5001.1.1)

FFamilyBac_rhodopsin(5001.1.1.6)

Ligands

in contact, ≤ 4 Å

2,3-di-O-phytanyl-sn-glycerolL2P
drugDrugBank DB03646
TetradecaneC14
DecaneD10

Pfam Families

PF01036Bac_rhodopsin

Bacteriorhodopsin-like protein

ClanCL0192GPCR_A

External Links

ECOD PDB View: 6GAF RCSB PDB: 6GAF PDBe: 6GAF UniProt: P02945

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

nonaneDD9

HeptaneHP6

PentadecaneMYS

N-octaneOCT

RetinalRET

TridecaneTRD

UndecaneUND

Shown in the structure viewer. Drug annotations from DrugDomain.