ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5ejaB4 - ECOD Domain | ECOD

ECOD/Domains/e5ejaB4

e5ejaB4

UID: 002484152

PDB

Range: B:208-364
PDB: 5EJA chain B(all domains)
UniProt: P17109 (all domains)
Gene: menD

Molecule: 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase (SEPHCHC synthase) (EC 2.2.1.9) (Menaquinone biosynthesis protein MenD)

3D Structure

Loading viewer...

Related Domains

Browse other domains in TPP_enzyme_M_2 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupDHS-like NAD/FAD-binding domain(2003.1.4)

FFamilyTPP_enzyme_M_2(2003.1.4.10)

Pfam Families

PF16582TPP_enzyme_M_2

Middle domain of thiamine pyrophosphate

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 5EJA RCSB PDB: 5EJA PDBe: 5EJA UniProt: P17109

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure