ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6cmlB2 - ECOD Domain | ECOD

ECOD/Domains/e6cmlB2

e6cmlB2

UID: 002486986

PDB

Range: B:232-602
PDB: 6CML chain B(all domains)
UniProt: Q38C91 (all domains)
Gene: Tb10.70.6470

Molecule: Methionyl-tRNA synthetase

3D Structure

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Related Domains

Browse other domains in tRNA-synt_1+tRNA-synt_1g →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupHUP domain-like(2005)

HH-groupHUP domains(2005.1)

TT-groupHUP domains(2005.1.1)

FFamilytRNA-synt_1+tRNA-synt_1g(2005.1.1.40)

Ligands

in contact, ≤ 4 Å

1-[(5-chloro-1H-imidazo[4,5-b]pyridin-2-yl)methyl]-4-[(2-chloro-4-methoxyphenyl)methyl]-3-ethyl-1,3-dihydro-2H-imidazol-2-one96S

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00133tRNA-synt_1

tRNA synthetases class I (I, L, M and V)

ClanCL0039HUP

PF09334tRNA-synt_1g

tRNA synthetases class I (M)

ClanCL0039HUP

External Links

ECOD PDB View: 6CML RCSB PDB: 6CML PDBe: 6CML UniProt: Q38C91

Downloads

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