ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4zt5B1 - ECOD Domain | ECOD

ECOD/Domains/e4zt5B1

e4zt5B1

UID: 002489639

PDB

Range: B:603-767
PDB: 4ZT5 chain B(all domains)
UniProt: Q38C91 (all domains)
Gene: Tb10.70.6470

Molecule: Methionyl-tRNA synthetase

3D Structure

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Related Domains

Browse other domains in Anticodon_3 →

Classification

AArchitecturealpha bundles(a.7)

XX-groupAnticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases(140)

HH-groupAnticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases(140.1)

TT-groupAnticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases(140.1.1)

FFamilyAnticodon_3(140.1.1.9)

Ligands

in contact, ≤ 4 Å

MethionineMET
drugDrugBank DB00134within 5 Å only

+ 2 additives (Sulfate ion, Dimethyl sulfoxide)

Sulfate ionSO4
DrugBank DB14546

Pfam Families

PF19303Anticodon_3

Anticodon binding domain of methionyl tRNA ligase

ClanCL0258DALR

External Links

ECOD PDB View: 4ZT5 RCSB PDB: 4ZT5 PDBe: 4ZT5 UniProt: Q38C91

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Dimethyl sulfoxideDMS

DrugBank DB01093within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.