ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5k0tA2 - ECOD Domain | ECOD

ECOD/Domains/e5k0tA2

e5k0tA2

UID: 002489671

PDB

Range: A:2-348
PDB: 5K0T chain A(all domains)
UniProt: P59078 (all domains)
Gene: metG

Molecule: Methionine--tRNA ligase

3D Structure

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Related Domains

Browse other domains in tRNA-synt_1, tRNA-synt_1e, tRNA-synt_1g →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupHUP domain-like(2005)

HH-groupHUP domains(2005.1)

TT-groupHUP domains(2005.1.1)

FFamilytRNA-synt_1, tRNA-synt_1e, tRNA-synt_1g(2005.1.1.55)

Ligands

in contact, ≤ 4 Å

1-{3-[(3-chloro-5-methoxybenzyl)amino]propyl}-3-phenylurea415

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00133tRNA-synt_1

tRNA synthetases class I (I, L, M and V)

ClanCL0039HUP

PF01406tRNA-synt_1e

tRNA synthetases class I (C) catalytic domain

ClanCL0039HUP

PF09334tRNA-synt_1g

tRNA synthetases class I (M)

ClanCL0039HUP

External Links

ECOD PDB View: 5K0T RCSB PDB: 5K0T PDBe: 5K0T UniProt: P59078

Downloads

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