ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6hr2F2 - ECOD Domain | ECOD

ECOD/Domains/e6hr2F2

e6hr2F2

UID: 002500763

PDB

Range: F:61-153
PDB: 6HR2 chain F(all domains)
UniProt: P40337 (all domains)
Gene: VHL

Molecule: von Hippel-Lindau disease tumor suppressor

3D Structure

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Related Domains

Browse other domains in VHL →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupImmunoglobulin-like beta-sandwich(11)

HH-groupImmunoglobulin-related(11.1)

TT-groupPrealbumin-like(11.1.4)

FFamilyVHL(11.1.4.9)

Ligands

in contact, ≤ 4 Å

(2~{S},4~{R})-~{N}-[[2-[2-[4-[[4-[3-azanyl-6-(2-hydroxyphenyl)pyridazin-4-yl]piperazin-1-yl]methyl]phenyl]ethoxy]-4-(4-methyl-1,3-thiazol-5-yl)phenyl]methyl]-1-[(2~{S})-2-[(1-fluoranylcyclopropyl)carbonylamino]-3,3-dimethyl-butanoyl]-4-oxidanyl-pyrrolidine-2-carboxamideFWZ

+ 2 additives (Dimethyl sulfoxide, 1,2-ETHANEDIOL)

Dimethyl sulfoxideDMS

Pfam Families

VHL beta domain

ClanCL0287Transthyretin

External Links

ECOD PDB View: 6HR2 RCSB PDB: 6HR2 PDBe: 6HR2 UniProt: P40337

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB01093

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.