ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6n67A1 - ECOD Domain | ECOD

ECOD/Domains/e6n67A1

e6n67A1

UID: 002507496

PDB

Range: A:13-384
PDB: 6N67 chain A(all domains)
UniProt: G0S6G2 (all domains)
Gene: CTHT_0034810

Molecule: tRNA ligase

3D Structure

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Related Domains

Browse other domains in RNA_lig_T4_1 →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupProtein kinase/SAICAR synthase/ATP-grasp(206)

HH-groupProtein kinase/SAICAR synthase/ATP-grasp(206.1)

TT-groupATP-grasp(206.1.3)

FFamilyRNA_lig_T4_1(206.1.3.24)

Ligands

in contact, ≤ 4 Å

alpha,beta-Methyleneadenosine 5'-triphosphateAPC
drugDrugBank DB02596
Chloride ionCL

+ 2 additives (Glycerin, Sulfate ion)

Glycerin

Pfam Families

PF09511RNA_lig_T4_1

RNA ligase

ClanCL0179ATP-grasp

External Links

ECOD PDB View: 6N67 RCSB PDB: 6N67 PDBe: 6N67 UniProt: G0S6G2

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB09462

Sulfate ionSO4

DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.