ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6cpzB1 - ECOD Domain | ECOD

ECOD/Domains/e6cpzB1

e6cpzB1

UID: 002514855

PDB

Range: B:1-56
PDB: 6CPZ chain B(all domains)
UniProt: P19909 (all domains)
Gene: spg

Molecule: Immunoglobulin G-binding protein G

3D Structure

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Related Domains

Browse other domains in IgG_binding_B →

Classification

AArchitecturea+b two layers(a.11)

XX-groupbeta-Grasp(221)

HH-groupImmunoglobulin-binding domains(221.3)

TT-groupImmunoglobulin-binding domains(221.3.1)

FFamilyIgG_binding_B(221.3.1.1)

Ligands

in contact, ≤ 4 Å

(4R)-2-METHYLPENTANE-2,4-DIOLMRD

+ 2 additives ((4r)-2-Methylpentane-2,4-Diol, Phosphate ion)

(4r)-2-Methylpentane-2,4-DiolMPD
DrugBank DB03564
Phosphate ionPO4

Pfam Families

PF01378IgG_binding_B

B domain

ClanCL0072Ubiquitin

External Links

ECOD PDB View: 6CPZ RCSB PDB: 6CPZ PDBe: 6CPZ UniProt: P19909

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB14523

Shown in the structure viewer. Drug annotations from DrugDomain.