ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6ml9E1 - ECOD Domain | ECOD

ECOD/Domains/e6ml9E1

e6ml9E1

UID: 002522958

PDB

Range: E:2-90,E:191-238
PDB: 6ML9 chain E(all domains)
UniProt: P02911 (all domains)
Gene: argT

Molecule: Lysine/arginine/ornithine-binding periplasmic protein

3D Structure

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Related Domains

Browse other domains in SBP_bac_3 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPeriplasmic binding protein-like II(7523)

HH-groupPeriplasmic binding protein-like II(7523.1)

TT-groupPeriplasmic binding protein-like II(7523.1.1)

FFamilySBP_bac_3(7523.1.1.4)

Ligands

in contact, ≤ 4 Å

ArginineARG
drugDrugBank DB00125

+ 2 additives (Acetate, Glycerin)

AcetateACT
DrugBank DB14511

Pfam Families

PF00497SBP_bac_3

Bacterial extracellular solute-binding proteins, family 3

ClanCL0177PBP

External Links

ECOD PDB View: 6ML9 RCSB PDB: 6ML9 PDBe: 6ML9 UniProt: P02911

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Glycerin

DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.