ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5npkD3 - ECOD Domain | ECOD

ECOD/Domains/e5npkD3

e5npkD3

UID: 002531292

PDB

Range: D:417-637
PDB: 5NPK chain D(all domains)
UniProt: P66937 (all domains)
Gene: gyrB

Molecule: DNA gyrase subunit B,DNA gyrase subunit B,DNA gyrase subunit A

3D Structure

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Related Domains

Browse other domains in DNA_gyraseB_C,Toprim →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupHAD domain-like(2006)

HH-groupHAD domain-related(2006.1)

TT-groupToprim domain(2006.1.3)

FFamilyDNA_gyraseB_C,Toprim(2006.1.3.1)

Ligands

in contact, ≤ 4 Å

~{N}-[(1~{R})-2-azanyl-1-phenyl-ethyl]-4-(1~{H}-pyrrolo[2,3-b]pyridin-3-yl)thiophene-2-carboxamide94H
MANGANESE (II) IONMN
metal

+ 1 additive (Glycerol)

Glycerol

Pfam Families

PF00986DNA_gyraseB_C

DNA gyrase B subunit, carboxyl terminus

Toprim domain

ClanCL0413Toprim-like

External Links

ECOD PDB View: 5NPK RCSB PDB: 5NPK PDBe: 5NPK UniProt: P66937

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.