ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6r2dB2 - ECOD Domain | ECOD

ECOD/Domains/e6r2dB2

e6r2dB2

UID: 002537996

PDB

Range: B:365-819
PDB: 6R2D chain B(all domains)
UniProt: A0R2B1 (all domains)
Gene: kgd

Molecule: Multifunctional 2-oxoglutarate metabolism enzyme

3D Structure

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Related Domains

Browse other domains in E1_dh →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupThiamin diphosphate-binding fold (THDP-binding)(7574)

HH-groupThiamin diphosphate-binding fold (THDP-binding)(7574.1)

TT-groupThiamin diphosphate-binding fold (THDP-binding)(7574.1.1)

FFamilyE1_dh(7574.1.1.2)

Ligands

in contact, ≤ 4 Å

Magnesium ionMG
metal
(4~{S})-4-[(2~{R})-3-[(4-azanyl-2-methyl-pyrimidin-5-yl)methyl]-4-methyl-5-[2-[oxidanyl(phosphonooxy)phosphoryl]oxyethyl]-2~{H}-1,3-thiazol-2-yl]-4-[ethoxy(oxidanyl)phosphoryl]-4-oxidanyl-butanoic acidZP1

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Dehydrogenase E1 component

ClanCL0254THDP-binding

External Links

ECOD PDB View: 6R2D RCSB PDB: 6R2D PDBe: 6R2D UniProt: A0R2B1

Downloads

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