ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6r4sE1 - ECOD Domain | ECOD

ECOD/Domains/e6r4sE1

e6r4sE1

UID: 002538068

PDB

Range: E:2-183,E:299-359,E:382-406
PDB: 6R4S chain E(all domains)
UniProt: P49642 (all domains)
Gene: PRIM1

Molecule: DNA primase small subunit

3D Structure

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Related Domains

Browse other domains in DNA_primase_S →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupPrim-pol domain(862)

HH-groupPrim-pol domain(862.1)

TT-groupPrim-pol domain(862.1.1)

FFamilyDNA_primase_S(862.1.1.1)

Ligands

in contact, ≤ 4 Å

ATPATP
drugDrugBank DB00171
MANGANESE (II) IONMN
metal
Zinc ionZN

Pfam Families

PF01896DNA_primase_S

DNA primase small subunit

ClanCL0243AEP

External Links

ECOD PDB View: 6R4S RCSB PDB: 6R4S PDBe: 6R4S UniProt: P49642

Downloads

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metal

Shown in the structure viewer. Drug annotations from DrugDomain.